兰州大学机构库

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Protein target highlights in CASP15: Analysis of models by structure providers 期刊论文
PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS, 2023
Authors:  Alexander, Leila T.;  Durairaj, Janani;  Kryshtafovych, Andriy;  Abriata, Luciano A.;  Bayo, Yusupha;  Bhabha, Gira;  Breyton, Cecile;  Caulton, Simon G.;  Chen, James;  Degroux, Seraphine...Alexander, Leila T.;  Durairaj, Janani;  Kryshtafovych, Andriy;  Abriata, Luciano A.;  Bayo, Yusupha;  Bhabha, Gira;  Breyton, Cecile;  Caulton, Simon G.;  Chen, James;  Degroux, Seraphine;  Ekiert, Damian C.;  Erlandsen, Benedikte S.;  Freddolino, Peter L.;  Gilzer, Dominic;  Greening, Chris;  Grimes, Jonathan M.;  Grinter, Rhys;  Gurusaran, Manickam;  Hartmann, Marcus D.;  Hitchman, Charlie J.;  Keown, Jeremy R.;  Kropp, Ashleigh;  Kursula, Petri;  Lovering, Andrew L.;  Lemaitre, Bruno;  Lia, Andrea;  Liu, Shiheng;  Logotheti, Maria;  Lu, Shuze;  Markusson, Sigurbjorn;  Miller, Mitchell D.;  Minasov, George;  Niemann, Hartmut H.;  Opazo, Felipe;  Phillips Jr, George N. N.;  Davies, Owen R.;  Rommelaere, Samuel;  Rosas-Lemus, Monica;  Roversi, Pietro;  Satchell, Karla;  Smith, Nathan;  Wilson, Mark A.;  Wu, Kuan-Lin;  Xia, Xian;  Xiao, Han;  Zhang, Wenhua;  Zhou, Z. Hong;  Fidelis, Krzysztof;  Topf, Maya;  Moult, John;  Schwede, Torsten
Favorite  |    Submit date:2023/11/28
CASP  cryo-EM  protein structure prediction  X-ray crystallography  
Structure and assembly of type VI secretion system cargo delivery vehicle 期刊论文
Cell Reports, 2023, 卷号: 42, 期号: 7
Authors:  He, Wenbo;  Wu, Ke;  Ouyang, Zhenlin;  Bai, Yixin;  Luo, Wen;  Wu, Di;  An, Hao;  Guo, Yucheng;  Jiao, Min;  Qin, Qian...He, Wenbo;  Wu, Ke;  Ouyang, Zhenlin;  Bai, Yixin;  Luo, Wen;  Wu, Di;  An, Hao;  Guo, Yucheng;  Jiao, Min;  Qin, Qian;  Zhang, Jiaxin;  Wu, Yi;  She, Junjun;  Hwang, Peter M.;  Zheng, Fang;  Zhu, Li;  Wen, Yurong
Favorite  |    Submit date:2023/11/28
Structure-function analysis of an ancient TsaD-TsaC-SUA5-TcdA modular enzyme reveals a prototype of tRNA t6A and ct6A synthetases 期刊论文
NUCLEIC ACIDS RESEARCH, 2023
Authors:  Jin, Mengqi;  Zhang, Zelin;  Yu, Zhijiang;  Chen, Wei;  Wang, Xiaolei;  Lei, Dongsheng;  Zhang, Wenhua
Favorite  |    Submit date:2023/11/28
基于冷冻电镜的金属有机框架及蛋白复合体的结构研究 学位论文
理学硕士, 兰州: 兰州大学, 2023
Authors:  张泽林
Favorite  |    Submit date:2023/11/15
冷冻电子显微镜  cryo-electron microscopy  金属有机框架  metal-organic framework materials  口蹄疫病毒  foot-and-mouth disease virus  TsaN蛋白  TsaN protein  微晶电子衍射  microcrystal electron diffraction  单颗粒三维重构  single-particle reconstruction  
An Unsupervised Classification Algorithm for Heterogeneous Cryo-EM Projection Images Based on Autoencoders 期刊论文
INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES, 2023, 卷号: 24, 期号: 9
Authors:  Wang, Xiangwen;  Lu, Yonggang;  Lin, Xianghong;  Li, Jianwei;  Zhang, Zequn
Favorite  |    Submit date:2023/07/18
cryo-electron microscopy  single-particle reconstruction  structural heterogeneity  autoencoder  unsupervised classification  
Vanilloid agonist-mediated activation of TRPV1 channels requires coordinated movement of the S1–S4 bundle rather than a quiescent state 期刊论文
Science Bulletin, 2022, 卷号: 67, 期号: 10, 页码: 1062-1076
Authors:  Sun, Meng-Yang;  Zhang, Xue;  Yu, Peng-Cheng;  Liu, Di;  Yang, Yang;  Cui, Wen-Wen;  Yang, Xiao-Na;  Lei, Yun-Tao;  Li, Xing-Hua;  Wang, Wen-Hui...Sun, Meng-Yang;  Zhang, Xue;  Yu, Peng-Cheng;  Liu, Di;  Yang, Yang;  Cui, Wen-Wen;  Yang, Xiao-Na;  Lei, Yun-Tao;  Li, Xing-Hua;  Wang, Wen-Hui;  Cao, Peng;  Wang, Heng-Shan;  Zhu, Michael X.;  Li, Chang-Zhu;  Wang, Rui;  Fan, Ying-Zhe;  Yu, Ye
Favorite  |    Submit date:2022/07/01
Activation analysis  Cell death  Electron microscopes  Fluorophores  Medical imaging  Structural dynamics  Allostery  Coordinated movement  Cryo-electron microscopy  Ligand-gated ion channels  Quiescent state  Transient receptor potential vanilloid  Transient receptor potential vanilloid 1  Vanilloid agonist  Voltage clamp  Voltage-clamp fluorometry  
Vanilloid agonist-mediated activation of TRPV1 channels requires coordinated movement of the S1-S4 bundle rather than a quiescent state 期刊论文
Science Bulletin, 2022, 卷号: 67, 期号: 10, 页码: 1062-1076
Authors:  Sun, Meng-Yang;  Zhang, Xue;  Yu, Peng-Cheng;  Liu, Di;  Yang, Yang;  Cui, Wen-Wen;  Yang, Xiao-Na;  Lei, Yun-Tao;  Li, Xing-Hua;  Wang, Wen-Hui...Sun, Meng-Yang;  Zhang, Xue;  Yu, Peng-Cheng;  Liu, Di;  Yang, Yang;  Cui, Wen-Wen;  Yang, Xiao-Na;  Lei, Yun-Tao;  Li, Xing-Hua;  Wang, Wen-Hui;  Cao, Peng;  Wang, Heng-Shan;  Zhu, Michael X.;  Li, Chang-Zhu;  Wang, Rui;  Fan, Ying-Zhe;  Yu, Ye
Favorite  |    Submit date:2022/11/09
Ligand-gated ion channels  TRPV1  Allostery  Voltage-clamp fluorometry  Vanilloid agonist  
Heterogeneous cryo-EM projection image classification using a two-stage spectral clustering based on novel distance measures 期刊论文
BRIEFINGS IN BIOINFORMATICS, 2022, 卷号: 23, 期号: 3
Authors:  Wang, Xiangwen;  Lu, Yonggang;  Lin, Xianghong
Favorite  |    Submit date:2022/04/20
cryo-electron microscopy (cryo-EM)  single-particle analysis  structural heterogeneity  distance measure  image classification  spectral clustering  
3D reconstruction from cryo-EM projection images using two spherical embeddings 期刊论文
COMMUNICATIONS BIOLOGY, 2022, 卷号: 5, 期号: 1
Authors:  Lu, Yonggang;  Liu, Jiaxuan;  Zhu, Li;  Zhang, Bianlan;  He, Jing
Favorite  |    Submit date:2022/07/01
A Fast Image Alignment Approach for 2D Classification of Cryo-EM Images Using Spectral Clustering 期刊论文
CURRENT ISSUES IN MOLECULAR BIOLOGY, 2021, 卷号: 43, 期号: 3, 页码: 1652-1668
Authors:  Wang, Xiangwen;  Lu, Yonggang;  Liu, Jiaxuan
Favorite  |    Submit date:2022/07/01
cryo-electron microscopy  single-particle reconstruction  class averaging  image alignment  2D interpolation  spectral clustering